PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G208300.1
Common NamePHAVU_008G208300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 875aa    MW: 99397.2 Da    PI: 6.8791
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G208300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.71.2e-1556130290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYneYA++vGFs +  ++ +sk +ge +  +fvC +e  +++  ++              C+a+++++k+ ++kw+vt++++eH+H++a
  Phvul.008G208300.1  56 FYNEYARRVGFSCKAGSHGRSKADGENMYWEFVCGREDLKRKLAES--------------CTAMIRIEKKGQNKWVVTQFVKEHSHSMA 130
                         ***********************************99988877666..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1256130IPR004330FAR1 DNA binding domain
PfamPF105511.2E-28272364IPR018289MULE transposase domain
PfamPF044343.6E-11550584IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.226550586IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-8561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MGEGSDHQAM ADDGNVEHIE GGVNNAENNS GSHVEVGVSE PYVGREFDSE DAAKTFYNEY  60
ARRVGFSCKA GSHGRSKADG ENMYWEFVCG REDLKRKLAE SCTAMIRIEK KGQNKWVVTQ  120
FVKEHSHSMA SLSKVHSIRP RRHFSSVGRT MPETYQGVGL VPSGVMYVSM DKNCIPTKNI  180
HGIRNIPAVA TISETAHLVK SPSMMNYAVR PTIQKRTLGR DAHNLLEYFK KMQAENPGFF  240
YAIQLDDDNH MSNVFWADAR SRTAYGHFGD AVTMDTTYRI NQYRVPFALF TGVNHHSQMI  300
LFGCALLLDD SEASFVWLFK TFLTAMNDRY PVSITTDQDR AIQTAISQVF PQTRHCISKW  360
HVLREGHEKL AYVCNMHPNF QIELYNCINL TETIEEFDSC WNFIMNKYEL TKNDWLQSLY  420
NARAQWVPAY FRDSFFAVIS PNQGIDGSFF YGFLNHQATL PVFFRQYEQA LENWFEKELE  480
TDYETISSTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGESSIFRV  540
AKFDDDQKAY VVTLNLSELR ADCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT  600
RNAKSSEHAG ESHVHDSLAS RYSNLCWEAI KYAEEGAMNV ETHDTAIGAL RESAKKISFM  660
KRSVAKVSPP SHPVSWTAYD DRKSPTSTAD TNPLLWPQQD ETTKRFNLND ASTPVQSVAD  720
LNLPRMTPVS LQRDDGPPEN MVVYPCLKSL TWVMENKNST PGNRVAVINL KLQDYSKNPS  780
TESEVKFNLS KVTLEPLFNH MVNIRDQLSA PTRKFAVLNL KLPVADTNTG ACEVKFQVSK  840
DTLVAVLRSM DYIREQLSVP GDAQTEAISK RPRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141585.10.0hypothetical protein PHAVU_008G208300g
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLV7B6X10.0V7B6X1_PHAVU; Uncharacterized protein
STRINGGLYMA02G44110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3